Course Syllabus

WILD 6900: Graduate Ecology [Tu and Th, 09:00-10:15, NR105]

Course Description

The goal of Graduate Ecology is to help graduate students become conversant in a broad set of fundamental ecological principles — both their underlying theory, and also their applications in natural resource management. We aim to equip students with tools to address questions like: how might a population's vital rates, or local density, affect its response to catch limits?  How might habitat improvement or degradation alter local metapopulation dynamics? How could the particular life history of an invading organism alter management outcomes?  

All the necessary mathematical and computational skills will be built within the course itself, and instructors will emphasize direct extension of abstract concepts to real-world scenarios throughout. The course will be a mixture of lectures and class-wide and smaller-group discussions. Out-of-class work will include reading, practice problems, and a little code (but mostly lots of reading). Most topics will be investigated in part through simulations developed through the class in R (or other programming languages of your choice). 

Graduate Ecology can be used to fulfill either Block #2 (Organismic or Pop Ecology) OR Block #3 (Community Ecology) but NOT BOTH for students seeking degrees through the Ecology Center. 

Course Objectives

Develop a strong conceptual framework for understanding the critical processes that shape organismal ecology. These include:

  • Processes driving individual-level pattern like:
      • Functional responses
      • Optimal foraging theory
      • Fitness
  • Processes driving population processes like:
      • Numerical responses
      • Life history (age structure, etc.)
      • Density dependence & carrying capacity
      • Spatial structure and metapopulation dynamics
      • Seasonality
  • Processes driving interspecific (or inter-actor) interactions, like:
      • Predator-prey interactions
      • Competitive interactions
      • Invasion and fire
      • Epidemics
      • Contexts in which a new actor can invade and persist in a system
      • Features leading to community stability

Instructors

Tal Avgar (tal.avgar@usu.edu) & Kezia Manlove (kezia.manlove@usu.edu)

Office hours: email either of us to set a time to meet

Course Resources

This course draws directly from peer-reviewed scientific research. We will provide all requisite papers through canvas. 

Course Requirements

Our intention is that this course will operate almost exclusively in-person, though we have taken steps to ensure quality remote delivery.  We will practice stringent social distancing protocols commensurate with USU's requirements within the classroom, and we encourage students to participate remotely whenever they wish. 

Evaluation Methods and Criteria

Grading will hinge on attendance, preparation, in-class engagement, and demonstration of competence in the course topics. Our grading philosophy is focused around formative (not evaluative) goals: we want you to learn, and we think one of the best ways to learn the content for this course is to practice applying the concepts covered in the course. 

Most of the out-of-class time commitment for this course will be allocated to reading and thinking. Students should anticipate 2-3 hours of out-of-class reading per week. 

We will ask you to practice with course ideas verbally through in-class discussions; visually through drawn sketches; and in writing through brief written descriptions of various processes. We will ask you to extend the concepts from this course to your own focal systems in writing.  

We anticipate that non-reading tasks will take some time -- maybe averaging 1 hour per week -- outside of class.  

Course Schedule/Outline

The course schedule remains flexible, but a tentative outline is included below to give you some preliminary idea of planned topics. 

August 31

Introduction and Functional Responses (Tal)

September 2

Functional Responses (Tal)

September 7

Modelling in Ecology and Evolution (Tal & Kezia)

September 9

Population Growth (Kezia)

September 14

Population Growth (Kezia)

September 16

Population Growth (Kezia)

September 21

Population Growth (Kezia)

September 23

Metapopulation (Tal)

September 28

Metapopulation (Tal)

September 30

Metapopulation (Kezia)

October 5

Life History (Tal)

October 7

Life History (Tal)

October 12

Consumer-Resources Dynamics (Kezia)

October 14

Consumer-Resources Dynamics (Kezia)

October 19

Consumer-Resources Dynamics (Tal)

October 21

Optimal Foraging Theory (Tal)

October 26

Optimal Foraging Theory (Tal)

October 28

Intraspecific Competition (Tal)

November 2

Intraspecific Competition (Tal)

November 4

Interspecific Competition (Kezia)

November 9

Interspecific Competition (Kezia)

November 11

Niche, Community, and Biodiversity (Tal)

November 16

Niche, Community, and Biodiversity (Tal)

November 18

Niche, Community, and Biodiversity (Kezia)

November 23

Niche, Community, and Biodiversity (Kezia)

November 30

Student presentations

December 2

Student presentations

December 7

Student presentations

December 9

Student presentations

December 14

Student presentations

December 16

Student presentations

 

Library Services

All USU students attending classes in Logan, at our Regional Campuses, or online can access all databases, e-journals, and e-books regardless of location. Additionally, the library will mail printed books to students, at no charge to them. Students can also borrow books from any Utah academic library. Take advantage of all library services and learn more at libguides.usu.edu/rc.

Classroom Civility

Utah State University supports the principle of freedom of expression for both faculty and students. The University respects the rights of faculty to teach and students to learn. Maintenance of these rights requires classroom conditions that do not impede the learning process. Disruptive classroom behavior will not be tolerated. An individual engaging in such behavior may be subject to disciplinary action. Read Student Code Article V Section V-3 for more information.

University Policies & Procedures

COVID-19 Classroom Accommodations

To ensure that you receive the appropriate accommodation for COVID-19 related challenges, the University requires you to fill out the COVID-19 Questionnaire. Upon doing so, the University COVID CARE Team will contact you to determine your needs and how to support you. The CARE Team will also contact your instructors and provide important direction on how best to accommodate your needs. For additional reference, please see USU's Attendance and Excused Absence policy and the COVID-19 Classroom Accommodations page.

Reducing COVID-19 Risk

You can help keep classes, events, and activities happening in person this semester by following these steps:

  1. Get vaccinated if you're able. Vaccines are the best available tool to help stop the spread of COVID-19. They are safe, free, and easy to access. 
  2. If you are vaccinated, let USU know. Please upload your proof of full vaccination to AggieHealth. If you are exposed to COVID-19, USU’s case containment will not require you to quarantine if they know you are vaccinated and you do not have symptoms.
  3. Stay home if you're sick and get tested for COVID-19 if you have symptoms or have been exposed. It’s important to not bring any illness to campus.
  4. Wear a mask indoors. Public health experts recommend that even vaccinated people wear masks indoors in high COVID-19 transmission areas, which includes most of Utah.

If USU’s COVID Case Containment team identifies an uncontained situation in the classroom, you will be notified of any temporary changes to your course delivery method through a Canvas announcement. Please make sure you are receiving immediate notifications of new Canvas announcements. The situation will be handled according to protocols on the COVID Classroom Exposure page.

Class Seating Charts (For In-Person Classes)

In classes with more than 10 students, a seating chart will be used to track where you are sitting. After the first week of classes, your instructor will tell you how to enter your seat number in Canvas. You must sit in the same seat for the rest of the semester. This is extremely important for tracking cases of COVID-19 and helping classes remain in person.  

Academic Freedom and Professional Responsibilities

Academic freedom is the right to teach, study, discuss, investigate, discover, create, and publish freely. Academic freedom protects the rights of faculty members in teaching and of students in learning. Freedom in research is fundamental to the advancement of truth. Faculty members are entitled to full freedom in teaching, research, and creative activities, subject to the limitations imposed by professional responsibility. Faculty Code Policy #403 further defines academic freedom and professional responsibilities.

Academic Integrity – "The Honor System"

Each student has the right and duty to pursue his or her academic experience free of dishonesty. To enhance the learning environment at Utah State University and to develop student academic integrity, each student agrees to the following Honor Pledge:
"I pledge, on my honor, to conduct myself with the foremost level of academic integrity."
A student who lives by the Honor Pledge is a student who does more than not cheat, falsify, or plagiarize. A student who lives by the Honor Pledge:

  • Espouses academic integrity as an underlying and essential principle of the Utah State University community;
  • Understands that each act of academic dishonesty devalues every degree that is awarded by this institution; and
  • Is a welcomed and valued member of Utah State University.

Academic Dishonesty

The instructor of this course will take appropriate actions in response to Academic Dishonesty, as defined the University’s Student Code.  Acts of academic dishonesty include but are not limited to:

  • Cheating: using, attempting to use, or providing others with any unauthorized assistance in taking quizzes, tests, examinations, or in any other academic exercise or activity.  Unauthorized assistance includes:
    • Working in a group when the instructor has designated that the quiz, test, examination, or any other academic exercise or activity be done “individually;”
    • Depending on the aid of sources beyond those authorized by the instructor in writing papers, preparing reports, solving problems, or carrying out other assignments;
    • Substituting for another student, or permitting another student to substitute for oneself, in taking an examination or preparing academic work;
    • Acquiring tests or other academic material belonging to a faculty member, staff member, or another student without express permission;
    • Continuing to write after time has been called on a quiz, test, examination, or any other academic exercise or activity;
    • Submitting substantially the same work for credit in more than one class, except with prior approval of the instructor; or engaging in any form of research fraud.
  • Falsification: altering or fabricating any information or citation in an academic exercise or activity.
  • Plagiarism: representing, by paraphrase or direct quotation, the published or unpublished work of another person as one‘s own in any academic exercise or activity without full and clear acknowledgment. It also includes using materials prepared by another person or by an agency engaged in the sale of term papers or other academic materials.

For additional information go to: ARTICLE VI. University Regulations Regarding Academic Integrity

Sexual Harassment/Title IX

Utah State University is committed to creating and maintaining an environment free from acts of sexual misconduct and discrimination and to fostering respect and dignity for all members of the USU community. Title IX and USU Policy 339 address sexual harassment in the workplace and academic setting.

The university responds promptly upon learning of any form of possible discrimination or sexual misconduct.  Any individual may contact USU’s Office of Equity for available options and resources or clarification.  The university has established a complaint procedure to handle all types of discrimination complaints, including sexual harassment (USU Policy 305), and has designated the Office of Equity Director/Title IX Coordinator as the official responsible for receiving and investigating complaints of sexual harassment. 

Withdrawal Policy and "I" Grade Policy

Students are required to complete all courses for which they are registered by the end of the semester. In some cases, a student may be unable to complete all of the coursework because of extenuating circumstances, but not due to poor performance or to retain financial aid. The term ‘extenuating’ circumstances includes: (1) incapacitating illness which prevents a student from attending classes for a minimum period of two weeks, (2) a death in the immediate family, (3) financial responsibilities requiring a student to alter a work schedule to secure employment, (4) change in work schedule as required by an employer, or (5) other emergencies deemed appropriate by the instructor.

Students with Disabilities

USU welcomes students with disabilities. If you have, or suspect you may have, a physical, mental health, or learning disability that may require accommodations in this course, please contact the Disability Resource Center (DRC) as early in the semester as possible (University Inn # 101, (435) 797‐2444,  drc@usu.edu ). All disability related accommodations must be approved by the DRC.  Once approved, the DRC will coordinate with faculty to provide accommodations.

Students who are at a higher risk for complications from COVID-19 or who contract COVID-19 may also be eligible for accommodations.

Diversity Statement

Regardless of intent, careless or ill-informed remarks can be offensive and hurtful to others and detract from the learning climate. If you feel uncomfortable in a classroom due to offensive language or actions by an instructor or student(s) regarding ethnicity, gender, or sexual orientation, contact:

You can learn about your student rights by visiting:
The Code of Policies and Procedures for Students at Utah State University: https://studentconduct.usu.edu/studentcode

Grievance Process

Students who feel they have been unfairly treated may file a grievance through the channels and procedures described in the Student Code: Article VII.

Full details for USU Academic Policies and Procedures can be found at:

Emergency Procedures

In the case of a drill or real emergency, classes will be notified to evacuate the building by the sound of the fire/emergency alarm system or by a building representative. In the event of a disaster that may interfere with either notification, evacuate as the situation dictates (i.e., in an earthquake when shaking ceases or immediately when a fire is discovered). Turn off computers and take any personal items with you. Elevators should not be used; instead, use the closest stairs.

Mental Health

Mental health is critically important for the success of USU students. As a student, you may experience a range of issues that can cause barriers to learning, such as strained relationships, increased anxiety, alcohol/drug problems, feeling down, difficulty concentrating and/or lack of motivation. These mental health concerns or stressful events may lead to diminished academic performance or reduce your ability to participate in daily activities. Utah State University provides free services for students to assist them with addressing these and other concerns. You can learn more about the broad range of confidential mental health services available on campus at Counseling and Psychological Services (CAPS).

Students are also encouraged to download the “SafeUT App” to their smartphones. The SafeUT application is a 24/7 statewide crisis text and tip service that provides real-time crisis intervention to students through texting and a confidential tip program that can help anyone with emotional crises, bullying, relationship problems, mental health, or suicide related issues.

 

Course Summary:

Course Summary
Date Details Due